INDEX

 

メインページ

研究内容

業績

構成員

 

構成員の出版業績リスト

（2012年以降）

 

個人の全業績はそれぞれのページで確認できます。

 

学術論文（査読付き）

Forthcoming

• Murakami, H., Yoon, S., Kasai, A., Minamoto, T., Yamamoto, S., Sakata, M. K., Horiuchi, T., Sawada, H., Kondoh, M., Yamashita, Y., Masuda, R. (accepted) Dispersion and degradation of environmental DNA from caged fish in a marine environment. Fisheries Science.
• Jo, T., Murakami, H.,Yamamoto, S., Masuda, R., Minamoto, T. (accepted) Effect of water temperature and fish biomass on environmental DNA shedding, degradation, and size distribution. Ecology and Evolution.
• Takeuchi, A., Watanabe, S., Yamamoto, S., Miller, M. J., Fukuba, T., Miwa, T., Okino, T., Minamoto, T., Tsukamoto, K. (accepted) First attempt of an oceanic environmental DNA survey of the spawning ecology of the Japanese eel Anguilla japonica. Marine Ecology Progress Series.
• Minamoto, T., Hayami, K., Sakata M. K., Imamura, A. (accepted) Real-time PCR assays for environmental DNA detection of three salmonid fish in Hokkaido, Japan: application to winter surveys. Ecological Research.
• 丹羽英之・坂田雅之・源利文・清野未恵子（掲載決定）河川における流程500m間隔での環境DNA分析と現地採集調査による魚類検出結果の比較. 保全生態学研究.

2018年

• Sato, M. O., Rafalimanantsoa, A., Ramarokoto, C., Rahetilahy, A. M., Ravoniarimbinina, P., Kawai, S., Minamoto, T., Sato, M., Kirinoki, M., Rasolofo, V., De Calan M., Chigusa, Y. (2018) Usefulness of environmental DNA for detection of Schistosoma mansoni in Madagascar. International Journal of Infectious Diseases 76, 130-136. LINK
• 赤塚真依子・高山百合子・伊藤一教・森本哲平・源利文（2018）海草場を対象とした環境DNA検出方法と三次元数値解析の適用性に関する検討. 土木学会論文集B2（海岸工学）74 (2), I_1225-I_1230.　LINK
• 高山百合子・赤塚真依子・伊藤一教・源利文（2018）アマモ場のモニタリング手法における環境DNAの活用について. 土木学会論文集B2（海岸工学）74 (2), I_1231-I_1236.　LINK
• Nakagawa, H., Yamamoto, S., Sato, Y., Sado, T., Minamoto, T., Miya, M. (2018) Comparing local- and regional-scale estimations of the diversity of stream fish using eDNA metabarcoding and conventional observation methods. Freshwater Biology 63 (6), 569-580. LINK
• Wu, Q., Kawano, K., Uehara, Y., Okuda, N., Hongo, M., Tsuji, S., Yamanaka, H., Minamoto, T. (2018) Environmental DNA reveals non-migratory individuals of Palaemon paucidens overwintering in Lake Biwa shallow waters. Freshwater Science 37 (2), 307-314. LINK
• Ushio, M., Murakami, H., Masuda, R., Sado, T., Miya, M., Sakurai, S., Yamanaka, H., Minamoto, T., Kondoh, T. (2018) Quantitative monitoring of multispecies fish environmental DNA using high-throughput sequencing. Metabarcoding & Metagenomics 2, e23297. LINK

2017年

• Doi, H., Akamatsu, Y., Watanabe, Y., Goto, M., Inui, R., Katano, I., Nagano, M., Takahara, T., Minamoto, T. (2017) Water sampling for environmental DNA surveys by using an unmanned aerial vehicle. Limnology and Oceangraphy: Methods 15, 939-944. LINK
• Jo, T., Murakami, H., Masuda, R., Sakata, M. K., Yamamoto, S., Minamoto, T. (2017) Rapid degradation of longer DNA fragments enables the improved estimation of distribution and biomass using environmental DNA. Molecular Ecology Resources 17 (6), e25-e33. LINK
• Sakata, M. K., Maki, N., Sugiyama, H., Minamoto, T. (2017) Identifying a breeding habitat of a critically endangered fish, Acheilognathus typus, in a natural river in Japan. The Science of Nature - Naturwissenschaften 104, 100. LINK 論文の内容が、NHK、朝日放送、秋田放送、朝日新聞、読売新聞、毎日新聞、日経新聞、神戸新聞、秋田魁新報などで紹介されました。
• Sato, M., Ushimaru, A., Minamoto, T. (2017) The effect of different personal histories on valuation of forest ecosystem services in urban areas: a case study of Mt. Rokko, Kobe, Japan. Urban Forestry & Urban Greening 28, 110-117. LINK
• Uchii, K., Doi, H., Yamanaka, H., Minamoto, T. (2017) Distinct seasonal migration patterns of Japanese native and non-native genotypes of common carp estimated by environmental DNA. Ecology and Evolution 7(20): 8515-8522. LINK
• Kouduka, M., Tanabe, A.S., Yamamoto, S., Yanagawa, K., Nakamura, Y., Akiba, F., Tomaru, H., Toju, H., Suzuki, Y. (2017) Eukaryotic diversity in late Pleistocene marine sediments around a shallow methane hydrate deposit in the Japan Sea. Geobiology 15 (5): 715-727. LINK
• Katano, I., Harada, K., Doi, H., Souma, R., Minamoto, T. (2017) Environmental DNA method for estimating salamander distribution in headwater streams, and a comparison of water sampling methods. PLOS ONE 12(5): e0176541. LINK
• Hashizume, H., Sato, M., Sato, M. O., Ikeda, S., Yoounan, T., Sanguankiat, S., Pongvongsa, T., Moji, K., Minamoto, T. (2017) Application of environmental DNA analysis for the detection of Opisthorchis viverrini DNA in water samples. Acta Tropica 169, 1-7. LINK
• Tsuji, S., Ushio, M., Sakurai, S., Minamoto, T. Yamanaka, H. (2017) Water temperature-dependent degradation of environmental DNA and its relation to bacterial abundance. PLOS ONE 12(4): e0176608. LINK
• Yamanaka, H., Minamoto, T., Matsuura, J., Sakurai, S., Tsui, S., Motozawa, H., Hongo, M., Sogo, Y., Kakimi, N., Teramura, I., Sugita, M., Baba, M., Kondo, A. (2017) A simple method for preserving environmental DNA in water samples at ambient temperature by addition of cationic surfactant. Limnology 17 (2), 233-241. LINK
• Minamoto, T., Uchii, K., Takahara, T., Kitayoshi, T., Tsuji, S., Yamanaka, H., Doi, H. (2017) Nuclear internal transcribed spacer-1 as a sensitive genetic marker for environmental DNA studies in common carp Cyprinus carpio. Molecular Ecology Resources 17 (2), 324-333. LINK
• Minamoto, T., Fukuda, M., Katsuhara, K.R., Fujiwara, A., Hidaka, S., Yamamoto, S., Takahashi, K., Masuda, R. (2017) Environmental DNA reflects spatial and temporal jellyfish distribution. PLOS ONE 12 (2), e0173073. LINK
  
• Doi, H., Uchii, K., Matsuhashi, S., Takahara, T., Yamanaka, H., Minamoto, T. (2017) Isopropanol precipitation method for collecting fish environmental DNA. Limnology and Oceanography: Methods, 15 (2), 212-218.LINK
• Yamamoto, S., Masuda, R., Sato, Y., Sado, T., Araki, H., Kondoh, M., Minamoto, T., Miya, M. (2017) Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea. Scientific Reports 7, 40368.LINK
• Tsuji, S., Yamanaka, H., Minamoto, T.(2017) Effects of water pH and proteinase K treatment on the yield of environmental DNA from water samples. Limnology 18 (1), 1-8. LINK
• Doi, H., Inui, R., Akamatsu, Y., Kanno, K., Yamanaka, H., Takahara, T., Minamoto, T. (2017) Environmental DNA analysis for estimating the abundance and biomass of stream fish. Freshwater Biology 62 (1), 30-39. LINK
  

2016年

• Miya, M., Minamoto, T., Yamanaka, H., Oka, S., Sato, K., Yamamoto, S., Sado, T., Doi, H. (2016) Use of a filter cartridge for filtration of water samples and extraction of environmental DNA. Journal of Visualized Experiments 117, e54741. LINK
  
• 高原輝彦・山中裕樹・源利文・土居秀幸・内井喜美子 (2016) 環境DNA分析の手法開発の現状〜淡水域の研究事例を中心にして〜. 日本生態学会誌 66 (3), 583-599.
  
• 山中裕樹・源利文・高原輝彦・内井喜美子・土居秀幸 (2016) 環境DNA分析の野外調査への展開. 日本生態学会誌 66 (3), 601-611.
  
• 福岡有紗・高原輝彦・松本宗弘・兵庫県立農業高校生物部・丑丸敦史・源利文 (2016) 在来希少種カワバタモロコの環境DNAによる検出系の確立. 日本生態学会誌 66 (3), 613-620.
  
• Yamanaka, H., Motozawa, H., Tsuji, S., Miyazawa, R. C., Takahara, T., Minamoto, T. (2016) On-site filtration of water samples for environmental DNA analysis to avoid DNA degradation during transportation. Ecological Research 31 (6), 963-967. LINK
• Matsuhashi, S., Doi, H., Fujiwara, A., Watanabe, S., Minamoto, T. (2016) Evaluation of the environmental DNA method for estimating distribution and biomass of submerged aquatic plants. PLOS ONE 11(6), e0156217. LINK
• Fujiwara, A., Matsuhashi, S., Doi, H., Yamamoto, S., Minamoto, T. (2016) Use of environmental DNA to survey the distribution of an invasive submerged plant in ponds. Freshwater Science 35 (2), 748-754. LINK
• Yamamoto, S., Minami, K., Fukaya, K., Takahashi, K., Sawada, H., Murakami, H., Tsuji, S., Hashizume, H., Kubonaga, S., Horiuchi, T., Hongo, M., Nishida, J., Okugawa, Y., Fujiwara, A., Fukuda, M., Hidaka, S., Suzuki, K. W., Miya, M., Araki, H., Yamanaka, H., Maruyama, A., Miyashita, K., Masuda, R., Minamoto, T., and Kondoh, M. (2016) Environmental DNA as a 'snapshot' of fish distribution: a case study of Japanese jack mackerel in Maizuru Bay, Sea of Japan. PLOS ONE 11(3), e1249786. LINK
• Toju, H., Yamamoto, S., Tanabe, A.S., Hayakawa, T., Ishii, H.S. (2016) Network modules and hubs in plant-root fungal biome. Journal of the Royal Society Interface 13, 20151097. LINK
• Ino, K., Kouduka, M., Hirota, A., Togo, Y., Fukuda, A., Komatsu, D., Tsunogai, U., Tanabe, A.S., Yamamoto, S., Iwatsuki, T., Mizuno, T., Ito, K., Suzuki, Y. (2016) Deep microbial life in high-quality granitic groundwater from geochemically and geographically distinct underground boreholes. Environmental Microbiology Reports 8, 285–294. LINK
  
• 源利文・山本哲史・笠井亮秀・近藤倫生 （2016） 環境DNAを用いた沿岸域における魚類モニタリング. 沿岸海洋研究. 53巻2号. pp. 173-178.
• Uchii, K., Doi, H., Minamoto, T. (2016) A novel environmental DNA approach to quantify the cryptic invasion of non-native genotypes. Molecular Ecology Resources 16 (2), 415-422. LINK
• Yamanaka, H., Minamoto, T. (2016) The use of environmental DNA of fishes as an efficient method of determining habitat connectivity. Ecological Indicators 62, 147-153. LINK
• Minamoto, T., Naka, T., Moji, K.,Maruyama, A. (2016) Techniques for the practical collection of environmental DNA: filter selection, preservation, and extraction. Limnology 17 (1), 23-32. LINK
• Yamamoto, S., Beljaev, E., Sota, T. (2016) Phylogenetic analysis of the winter geometrid genus Inurois reveals repeated reproductive season shifts. Molecular Phylogenetics and Evolution 94 part A, 47-54. LINK

2015年

• Matsumae, H., Ishiwata, R., Minamoto, T., Ishida, N., Ogishima, S., Tanaka, H. (2015) Detection of periodic patterns in microarray data reveals novel oscillating transcripts of biological rhythms in Ciona intestinalis. Artificial Life and Robotics 20 (4), 347-352. LINK
• Miya, M., Sato, Y. Fukunaga, T., Sado, T., Poulsen, J.Y., Sato., K., Minamoto, T., Yamamoto, S., Yamanaka, H., Araki, H., Kondoh, M., Iwasaki, W. (2015) MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: Detection of more than 230 subtropical marine species. Royal Society Open Science 2, 150088. LINK　論文の内容が、NHK、日経新聞、千葉日報、琉球新報、沖縄タイムスなどで紹介され ました。
• Koizumi, N., Takahara, T., Minamoto, T., Doi, H., Mori, Atsushi, Watanabe, K., Takemura, T. (2015) Preliminary experiment for detection method of fish inhabiting agricultural drainage canals using environmental DNA. 農業農村工学会論文集 297 (83-3), IV_7-IV_8. LINK
• Doi, H., Takahara, T., Minamoto, T., Matsuhashi, S., Uchii, K., Yamanaka, H. (2015) Droplet digital Polymerase chain reaction (PCR) outperforms real-time PCR in the detection of environmental DNA from an invasive fish species. Environmental Science and Technology 49 (9), 5601-5608. LINK
• Doi, H., Uchii, K., Takahara, T., Matsuhashi, S., Yamanaka, H., Minamoto, T. (2015) Use of droplet digital PCR for estimation of fish abundance and biomass in environmental DNA surveys. PLOS ONE 10(3): e0122763. LINK
• Fukumoto S., Ushimaru A., Minamoto T. (2015) A basin-scale application of environmental DNA assessment for rare endemic species and closely related exotic species in rivers: A case study of giant salamanders in Japan. Journal of Applied Ecology 52 (2) 358-365. LINK　論文の内容が、NHK、サンテレビ、読売新聞、朝日新聞、産経新聞、日経新聞、神戸 新聞、共同通信、時事通信などで紹介されました。
• Takahara T., Minamoto T., Doi H. (2015) Effects of sample processing on the detection rate of environmental DNA from the Common Carp (Cyprinus carpio). Biological Conservation, 183, 64-69. LINK
• Minamoto T., Pu X., Xie J., Dong Y., Wu D., Kong H., Yang X., Takahara T., Honjo M. N., Yamanaka H., Kawabata Z. (2015) Monitoring of fish pathogenic viruses in natural lakes in Yunnan, China. Limnology 16(1), 69-77. LINK

2014年

• Maruyama A., Nakamura K., Yamanaka H., Kondoh M., Minamoto T. (2014) The release rate of environmental DNA from juvenile and adult fish. PLoS ONE. 9 (12), e114639 LINK
• 水町衣里・加納圭・伊藤真之・源利文・中山晶絵・蛯名邦禎・秋谷直矩（2014）パブリックコメント・ ワークショップの試行　〜「宇宙基本計画（案）」をテーマとしたワークショップの事例報告〜. 科学技術コミュニケーション 15, 123-136. LINK
• Takahara T., Honjo M. N. Uchii K., Minamoto T., Doi H., Ito T., Kawabata Z. (2014) Effects of daily temperature fluctuation on the survival of carp infected with Cyprinid herpesvirus 3. Aquaculture 433, 208-213. LINK
• Takahara T., Minamoto T., Doi H., Ito T., Kawabata Z. (2014) Differences between domesticated Eurasian and Japanese indigenous strains of the common carp (Cyprinus carpio) in cortisol release following acute stressor. Ichthyological Research 61 (2) 165-168. LINK
• Uchii K., Minamoto T., Honjo M.N., Kawabata Z. (2014) Seasonal reactivation enables Cyprinid herpesvirus 3 to persist in a wild host population. FEMS Microbiol. Ecol. 87 (2) 536-542. LINK

2013年

• Uchii K., Okuda N., Minamoto T., Kawabata Z. (2013) An emerging infectious pathogen endangers an ancient lineage of common carp by acting synergistically with conspecific exotic strains. Animal Conservation 16(3), 324-330. LINK
• 谢杰・吴德意・陈雪初・孔海南・普孝英・杨晓霞・源利文・山中裕树・本庄三惠・川端善一郎・李梅新 (2013) 滇池和洱海湖滨带水生植被状况与水质的关系研究. 环境科学与技术 36 (2) 61-65. LINK
• Takahara T., Minamoto T., Doi H. (2013) Using environmental DNA to estimate the distribution of an invasive fish species in ponds. PLOS ONE. 8(2): e56584. LINK 論文の内容が朝日新聞、読売新聞、西日本新聞、共同通信他で紹介されました

2012年

• Minamoto T.*, Yamanaka H.*, Takahara T., Honjo M. N., Kawabata Z. (2012) Surveillance of fish species composition using environmental DNA. Limnology 13(2), 193-197. (*equal contribution) LINK　論文の内容が、読売新聞、京都新聞で紹介されました
• Minamoto T., Honjo M. N., Yamanaka H., Uchii K., Kawabata Z. (2012) Nationwide Cyprinid herpesvirus 3 contamination in natural rivers of Japan. Res. Vet. Sci. 93 (1) 508-514. LINK
• Yamanaka H., Minamoto T., Wu D., Kong H., Wei Z.-H., Liu B., Kawabata Z. (2012) Spatial-temporal analysis of water temperatures during spring in Lake Erhai, China: implications for fisheries. Inland Waters 2(3), 129-136. LINK　関連する写真がInland Waters誌の表紙に採用されました
• Takahara T., Minamoto T., Yamanaka H., Doi H., Kawabata Z. (2012) Estimation of fish biomass using environmental DNA. PLOS ONE, 7 (4), e35868. LINK論 文の内容が、読売新聞、毎日新聞、日本経済新聞、西日本新聞、テレビ新広島で紹介されました
• Minamoto T., Fuchikawa, T., Shimizu I. (2012) Expression of spliced variants of period mRNA in the Japanese honeybee Apis cerana japonica. Biol. Rhythm Res. 43 (2), 125-135. LINK
• Honjo M. N., Minamoto T., Kawabata Z. (2012) Reservoirs of Cyprinid herpesvirus 3 (CyHV-3) DNA in sediments of natural lakes and ponds. Vet. Microbiol. 155 (2-4), 183-190. LINK
• Minamoto T., Wada E., Shimizu I. (2012) A new method for random mutagenesis by error-prone polymerase chain reaction using heavy water. J. Biotech. 157 (1), 71-74. LINK

著書・その他出版物

• 源利文 (2018) 種特異的な環境DNA検出によるマクロ生物の生態調査. 水環境学会誌 41A (4), 123-127.
  
• 池田幸資・土居秀幸・源利文 (2018) 水を汲むだけの生物調査〜環境DNA技術の紹介〜. 技術士 30 (3), 20-21.
  
• 源利文 (2018) 環境DNAとは何か. 海洋と生物 40 (1), 3-8.
  
• 益田玲爾・村上弘章・高橋宏司・源利文・宮正樹 (2018) 環境DNAの有効性：水槽実験とフィールドでの検証. 海洋と生物 40 (1), 17-22.
  
• 深谷肇一・長田穣・源利文 (2018) 環境DNAによる個体数・生物量推定の可能性. 海洋と生物 40 (1), 47-53.
  
• 源利文 (2017) 水域生態系における環境DNAモニタリング手法開発の現在. 環境技術 46 (12), 624-629.
  
• 源利文・内井喜美子・高原輝彦・土居秀幸 (2017) 環境DNAモニタリング手法の課題と展望. 環境技術 46 (12), 648-652.
  
• 源利文 (2017) 環境DNAを用いた感染症研究への期待. ウイルス 66, 171-178.
  
• Minamoto, T. (2017) Random Mutagenesis by Error-Prone Polymerase Chain Reaction Using a Heavy Water Solvent in "Methods in Molecular Biology Volume 1498 In Vitro Mutagenesis" (Ed. Andrew Reeves), Springer New York, pp. 491-495. LINK
  
• 内井喜美子・源利文土居秀幸・高原輝彦・山中裕樹・片野泉 (2016) 環境DNA分析：新しい水棲生物分布調査法. 日本生態学会誌 66 (3), 581-582.
  
• 源利文・内井喜美子・山中裕樹・高原輝彦・片野泉・土居秀幸　(2016) 環境DNA分析のさらなる進展にむけて. 日本生態学会誌 66(3), 621-623.
  
• 源利文 (2016) 環境DNAを用いて水中の生物相を知る. BIOINDUSTRY, 33 (6), 60-65.
  
• 源利文・伊藤真之・蛯名邦禎 (2016) 環境ＤＮＡ分析手法による高校生研究活動への支援. 日本科学教育学会研究会研究報告 30, 21-24.
• 蛯名邦禎・伊藤真之・梅村界渡・源利文 (2016) 市民による科学情報読み解きへの支援 -「IPCCレポートを根掘り葉掘り読む会」-. 日本科学教育学会研究会研究報告 30, 17-20.
  
源利文 (2016) 感染症の発症メカニズム. 日本生態学会編 感染症の生態学. 共立出版, 東京都文京区, pp 39-51. LINK
• 岩崎渉・佐藤行人・源利文・山中裕樹・荒木仁志・宮正樹 (2016) 環境DNA研究のインパクト. 実験医学 34 (1), 103-107.
• 源利文 (2014)環境DNA：エコヘルス研究の新しいツール. 医学のあゆみ. 249巻, 12号. pp 1264-1269. LINK
• 高原輝彦・源利文・土居秀幸(2014) 水を調べるだけで生き物がわかる！環境DNAを利用した生物分布モニタリング法. 日本陸水学会東海支部会編 身近な水の環境科学 実習・測定編. 朝倉書店, 東京都新宿区, pp. 159-161. LINK
• 源利文・川端善一郎 (2014) 湖の環境改変と感染症. 川端善一郎、孔海南、呉得意、福士由紀、窪田順平編 湖の現状と未来可能性（RIHN-China Study Series No.3）. 松香堂書店, 京都市左京区, pp.75-86. （日中英3カ国語出版：担当箇所は日英2カ国語で記述）
• 谢强・吴德意・源利文・山中裕树・本庄三惠・川端善一郎 (2014) 水生植物湖滨带改善现场实证性研究. 川端善一郎、孔海南、呉德意、福士由紀、窪田順平編 湖の現状と未来可能性（RIHN-China Study Series No.3）. 松香堂書店, 京都市左京区, pp.139-151. （日中英3カ国語出版：担当箇所は中英2カ国語で記述）
• 源利文（2014）「環境DNAを用いた水中動物相のモニタリング」（総合地球環境学研究所編：地球環境学マニュアル２ はかる・みせる・読みとく） 朝倉書店（東京） pp.68-69. LINK

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