メンバー紹介

特命准教授秀瀬 涼太 Ryota Hidese

経歴

2005/03
大分大学 工学部 応用化学科 卒業
2005/04
京都大学 化学研究所 研究生 (2006年3月まで)
2008/03
京都大学 大学院 農学研究科 修士課程応用生命科学専攻 修了
2009/04
日本学術振興会 特別研究員(研究職) (2011年3月まで)
2010/03
日本学術振興会 優秀若手研究者海外派遣事業(派遣先:ウィスコンシン大学マディソン校)
特別研究員 (2010年9月まで)
2011/03
京都大学 大学院 農学研究科 博士後期課程応用生命科学専攻 修了
2011/04
関西学院大学 大学院 理工学研究科 生命環境科学研究センター 博士研究員 (2014年3月まで)
2014/04
マックスプランク陸生微生物学研究所 博士研究員 (2015年3月まで)
2015/04
関西学院大学 理工学部生命科学科 助教 (2018年3月まで)
2018/04
神戸大学 大学院 科学技術イノベーション研究科 特命准教授
2021/03
神戸大学 先端バイオ工学研究センター 配置(兼任)
2023/04
株式会社バッカス・バイオイノベーション 研究チーム チーフ(6月より マネジャーに呼称変更)
 
2023/12
神戸大学 先端バイオ工学研究センター 特命准教授

受賞等

  • 2019 日本生物工学会 2019年度(第27回)生物工学論文賞
  • 2018 極限環境生物学会 研究奨励賞
  • 2018 平成30年度 長瀬研究振興賞
  • 2018 日本生物工学会 2018年度(第26回)生物工学論文賞

発表論文

  1. Hidese, R., Ohbayashi, R., Kato, Y., Matsuda, M., Tanaka, K., Imamura, S., Ashida, H., Kondo, A., Hasunuma, T. (2023/12) ppGpp accumulation reduces the expression of the global nitrogen homeostasis-modulating NtcA regulon by affecting 2-oxoglutarate levels, Communications Biology, 6, 1285
  2. Hidese, R., Matsuda, M., Kajikawa, M., Osanai, T., Kondo, A., Hasunuma, T. (2022/11) Metabolic and microbial community engineering for four-carbon dicarboxylic acid production from CO2-derived glycogen in the Cyanobacterium Synechocystis sp. PCC6803, ACS Synthetic Biology, 11, 4054-4064
  3. Oyama, T., Kato, Y., Hidese, R., Matsuda, M., Matsutani, M., Watanabe, S., Kondo, A., Hasunuma, T. (2022/09) Development of a stable semi-continuous lipid production system of an oleaginous Chlamydomonas sp. mutant using multi-omics profiling, Biotechnology for Biofuels and Bioproducts, 15, 95
  4. Kato, Y., Inabe, K., Hidese, R., Kondo, A., Hasunuma, T. (2022/01) Metabolomics-based engineering for biofuel and bio-based chemical production in microalgae and cyanobacteria: A review, Bioresource Technology, 344(A): 126196
  5. Inabe, K., Miichi, A., Matsuda, M., Yoshida, T., Kato, Y., Hidese, R., Kondo, A., Hasunuma, T. (2021/12) Nitrogen availability affects the metabolic profile in Cyanobacteria, Metabolites, 11, 867
  6. Kato, Y., Oyama, T., Inokuma, K., Vavricka, CJ., Matsuda, M., Hidese, R., Satoh, K., Oono, Y., Chang, JS., Hasunuma, T., Kondo, A. (2021/04) Enhancing carbohydrate repartitioning into lipid and carotenoid by disruption of microalgae starch debranching enzyme, Communications Biology, 4: 450
  7. Fukuda, W., Yamori, Y., Hamakawa, M., Osaki, M., Fukuda, M., Hidese, R., Kanesaki, Y., Okamoto-Kainum, A., Kato, S., Fujiwara, S. (2020/02) Genes regulated by branched-chain polyamine in the hyperthermophilic archaeon Thermococcus kodakarensis, Amino Acids, 52, 287-299
  8. Hidese, R.#, Matsuda, M.#, Osanai, T., Hasunuma, T.*, Kondo, A. (2020/01) Malic enzyme facilitates D-lactate production through increased pyruvate supply during anoxic dark fermentation in Synechocystis sp. PCC 6803, ACS Synthetic Biology, 9, 260-268
    # equally contributed authors
  9. Hidese, R., Toyoda, M., Yoshino, KI., Fukuda, W., Wihardja, GA., Kimura, S., Fujita, J., Niitsu, M., Oshima, T., Imanaka, T., Mizohata, E., Fujiwara, S. (2019/10) The C-terminal flexible region of branched-chain polyamine synthase facilitates substrate specificity and catalysis. The FEBS Journal, 286(19), 3926-3940
  10. Yamori, Y., Hamakawa, M., Hidese, R., Fukuda, M., Atomi, H., Fukuda, W., Fujiwara, S. (2019/05) Branched-chain polyamine stabilizes RNA polymerase at elevated temperatures in hyperthermophiles. Amino Acids, 1-11
  11. Sakihama, Y., Hidese, R., Hasunuma, T., Kondo, A. (2019/03) Increased flux in acetyl-CoA synthetic pathway and TCA cycle of Kluyveromyces marxianus under respiratory conditions. Scientific Reports, 9(1): 5319
  12. Okano, H., Baba, M., Hidese, R., Iida, K., Li, T., Kojima, K., Takita, T., Yanagihara, I., Fujiwara, S., Yasukawa, K. (2018/08) Accurate fidelity analysis of the reverse transcriptase by a modified next-generation sequencing. Enzyme Microb Technol, 115: 81-85
  13. Akasaka, N., Kato, S., Kato, S., Hidese, R., Wagu, Y., Sakoda, H., Fujiwara, S. (2018/07) Agmatine Production by Aspergillus oryzae Is Elevated by Low pH during Solid-State Cultivation. Appl Environ Microbiol, 17; 84(15)
  14. Okano, H., Baba, M., Kawato, K., Hidese, R., Yanagihara, I., Kojima, K., Takita, T., Fujiwara, S., Yasukawa, K. (2018/03) High sensitive RNA detection by one-step RT-PCR using the genetically engineered variant of DNA polymerase with reverse transcriptase activity from hyperthermophilies, Journal of Bioscience and Bioengineering, 125(3), 275-281
  15. Hidese, R., Kawato, K., Nakura, Y., Yasukawa, K., Yanagihara, I., Fujiwara, S. (2018/01) Thermostable DNA helicase improves the sensitivity of digital PCR, Biochemical and Biophysical Research Communications, 495(3), 2189-2194
  16. Ishii, Y., Akasaka, N., Sakoda, H., Hidese, R., Fujiwara, S. (2018/01) Leucine responsive regulatory protein is involved in methionine metabolism and polyamine homeostasis in acetic acid bacterium Komagataeibacter europaeus, Journal of Bioscience and Bioengineering, 125(1), 67-75
  17. Hidese, R., Tse, KM., Kimura, S., Mizohata, E., Fujita, J., Horai, Y., Umezawa, N., Higuchi, T., Niitsu, M., Oshima, T., Imanaka, T., Inoue, T., Fujiwara, S. (2017/11) Active site geometry of a novel aminopropyltransferase for biosynthesis of hyperthermophile-specific branched-chain polyamine. The FEBS Journal, 284(21), 3684-3701
  18. Yasukawa, K., Iida, K., Okano, H., Hidese, R., Baba, M., Yanagihara, I., Kojima, K., Takita, T., Fujiwara, S. (2017/10) Next-generation sequencing-based analysis of reverse transcriptase fidelity. Biochemical and Biophysical Research Communications, 492(2): 147-153
  19. Hidese, R., Yamashita, K., Kawazuma, K., Kanai, T., Atomi, H., Imanaka, T., Fujiwara, S. (2017/09) Gene regulation of two ferredoxin:NADP+ oxidoreductases by the redox-responsive regulator SurR in Thermococcus kodakarensis, Extremophiles, 21(5): 903-917
  20. Gao, L., Hidese, R., Fujiwara, S. (2017/09) Function of a thermophilic archaeal chaperonin is enhanced by electrostatic interactions with its targets, Journal of Bioscience and Bioengineering, 124(3): 283-288
  21. Hidese, R., Im, KH., Kobayashi, M., Niitsu, M., Furuchi, T., Fujiwara, S. (2017/07) Identification of a novel acetylated form of branched-chain polyamine from a hyperthermophilic archaeon Thermococcus kodakarensis, Bioscience, Biotechnology, and Biochemistry, 81(9): 1845-1849
  22. Okano, H., Baba, M., Yamasaki, T., Hidese, R., Fujiwara, S., Yanagihara, I., Ujiiye, T., Hayashi, T., Kojima, K., Takita, T., Yasukawa, K. (2017/05) High sensitive one-step RT-PCR using MMLV reverse transcriptase, DNA polymerase with reverse transcriptase activity, and DNA/RNA helicase, Biochemical and Biophysical Research Communications, 487(1): 128-133
  23. Okano, H., Katano, Y., Baba, M., Fujiwara, A., Hidese, R., Fujiwara, S., Yanagihara, I., Hayashi, T., Kojima, K., Takita, T., Yasukawa, K. (2017/01) Enhanced detection of RNA by MMLV reverse transcriptase coupled with termostable DNA polymerase and DNA/RNA helicase, Enzyme and Microbial Technology, 96: 111-120
  24. Fujiwara, A., Kawato, K., Kato, S., Yasukawa, K., Hidese, R., Fujiwara, S. (2016/05) Application of a Euryarchaeota-Specific Helicase from Thermococcus kodakarensis for Noise Reduction in PCR, Applied and Environmental Microbiology, 82(10): 3022-3031
  25. Hidese, R., Ataka, K., Bill, E., Shima, S. (2015/07) CuI and H2O2 Inactivate and FeII Inhibits [Fe]-Hydrogenase at very low Concentrations, ChemBioChem, 16(13): 1861-1865
  26. Akasaka, N., Astuti, W., Ishii, Y., Hidese, R., Sakoda, H., Fujiwara, S. (2015/06) Change in the plasmid copy number in acetic acid bacteria in response to growth phase and acetic acid concentration, Journal of Bioscience and Bioengineering, 119(6): 661-668
  27. Akasaka, N., Ishii, Y., Hidese, R., Sakoda, H., Fujiwara, S. (2014/12) Enhanced production of branched-chain amino acids by Gluconacetobacter europaeus with a specific regional deletion in a leucine responsive regulator, Journal of Bioscience and Bioengineering, 118(6): 607-615
  28. Hidese, R., Inoue, T., Imanaka, T., Fujiwara, S. (2014/07) Cysteine desulphurase plays an important role in environmental adaptation of the hyperthermophilic archaeon Thermococcus kodakarensis, Molecular Microbiology, 93(2): 331-345
  29. Okada, K., Hidese, R., Fukuda, W., Niitsu, M., Takao, K., Horai, Y., Umezawa, N., Higuchi, T., Oshima, T., Yoshikawa, Y., Imanaka, T., Fujiwara, S. (2014/05) Identification of a novel aminopropyltransferase involved in the synthesis of branched-chain polyamines in hyperthermophiles, Journal of Bacteriology, 196(10): 1866-1876
  30. Hidese, R., Nishikawa, R., Gao, L., Katano, M., Imai, T., Kato, S., Kanai, T., Atomi, H., Imanaka, T., Fujiwara, S. (2014/05) Different roles of two transcription factor B proteins in the hyperthermophilic archaeon Thermococcus kodakarensis, Extremophiles, 18(3): 573-588
  31. Hidese, R., Mihara, H., Kurihara, T., Esaki, N. (2014/03) Global identification of genes affecting iron-sulfur cluster biogenesis and iron homeostasis, Journal of Bacteriology, 196(6):1238-1249
  32. Akasaka, N., Sakoda, H., Hidese, R., Ishii, Y., Fujiwara, S. (2013/12) An efficient method using Gluconacetobacter europaeus to reduce an unfavorable flavor compound, acetoin, in rice vinegar production, Applied and Environmental Microbiology, 79(23): 7334-7342
  33. Nagaoka, E., Hidese, R., Imanaka, T., Fujiwara, S. (2013/08) Importance and determinants of induction of cold-induced DEAD RNA helicase in the hyperthermophilic archaeon Thermococcus kodakarensis, Journal of Bacteriology, 195(15): 3442-3450
  34. Hidese, R., Mihara, H., Kurihara, T., Esaki, N. (2012/10) Pseudomonas putida PydR, a RutR-like transcriptional regulator, represses the dihydropyrimidine dehydrogenase gene in the pyrimidine reductive catabolic pathway, Journal of Biochemistry, 152(4): 341-346
  35. Hidese, R., Mihara, H., Esaki, N. (2011/07) Bacterial cysteine desulfurases: versatile key players in biosynthetic pathways of sulfur-containing biofactors, Applied Microbiology and Biotechnology, 91(1): 47-61
  36. Hidese, R., Mihara, H., Kurihara, T., Esaki, N. (2011/02) Escherichia coli dihydropyrimidine dehydrogenase is a novel NAD-dependent heterotetramer essential for the production of 5,6-dihydrouracil, Journal of Bacteriology, 193(4): 989-993
  37. Hidese, R., Mihara, H., Esaki, N. (2009/09) Functional analysis of a novel NADH-dependent dihydropyrimidine dehydrogenase from Escherichia coli, Vitamins (Japan), 83(9): 528-532
  38. Mihara, H., Hidese, R., Yamane, M., Kurihara, T., Esaki, N. (2008/08) The iscS gene deficiency affects the expression of pyrimidine metabolism genes, Biochemical and Biophysical Research Communications, 372(3): 407-411

総説・解説等

  1. 近藤昭彦, 蓮沼誠久, 秀瀬涼太, 育種技術 -突然変異から代謝工学へ-, 日本生物工学会100年史, 第3章 生物工学の研究100年, 29-31 (2022/10)
  2. 蓮沼誠久, 秀瀬涼太, 番場崇弘, [特集]「生物機能を利用したモノづくり」に貢献するプロセス強化 微生物の高速育種を実現するスマートセル創出プラットフォーム, 化学工学, 86(4), 157-160 (表紙採用) (2022/04)
  3. 加藤悠一, 秀瀬涼太, 蓮沼誠久, 特集 藻類バイオマス利用のための新しい生物工学(後半), 光合成メタボロミクスの物質生産への応用, 生物工学会誌, 99(9), 456-460 (2021/09)
  4. 藤原伸介, 藤原綾子, 秀瀬涼太, 耐熱性ヘリカーゼを利用した高精度核酸検出技術の開発, 生物工学会誌, 95(7): 383-387 (2017/07)
  5. 秀瀬涼太, 藤原伸介, 超好熱性アーキアThermococcus kodakarensis由来分岐鎖ポリアミン合成酵素の構造と機能, 酵素工学ニュース, 75 (2016/04)
  6. 秀瀬涼太, 進化は長い目で見て. 生物工学会誌, 94(3): 131 (2016/03)
  7. 秀瀬涼太, 藤原伸介, 好熱菌の低温ストレス耐性, 生物工学会誌, 93(8):464-467 (2015/08)
  8. 秀瀬涼太, 今岡進, 藤原伸介, 耐熱性タンパク質を利用したビスフェノールAの吸着, ケミカルエンジニアリング, 59(4): 17-21 (2014/04)
  9. 秀瀬涼太, 藤原伸介, 高温において翻訳活性化作用を持つポリアミン, バイオサイエンスとインダストリー, 70(3): 211-212 (2012/05)
  10. 秀瀬涼太, シャペロニンと生物進化, 生物工学会誌, 90(1): 39 (2012/01)

著書

     
  1. 秀瀬涼太, 蓮沼誠久. 水素酸化細菌によるCO2吸収, 第5章 CO2からの有用物質生産, 微生物を活用した有用物質の製造技術, シーエムシー出版, 170-179 (2023/05)
  2. 石井純, 西晶子, 北野美保, 中村朋美, 庄司信一郎, 秀瀬涼太, 蓮沼誠久, 近藤昭彦, 微生物を用いた物質生産とハイスループット微生物構築技術, スマートセルインダストリー -微生物細胞を用いた物質生産の展望-, 第1編 ハイスループット合成・分析・評価技術, 第2章 ハイスループット微生物構築・評価技術, 39-43, シーエムシー出版 (2018/06)
  3. Hidese, R., Fukuda, W., Niitsu, M., Fujiwara, S. Identification of branched-chain polyamines in hyperthermophiles, In Methods in Molecular Biology, Ruben Alcazar and Antonio F. Tiburcio (eds.). Heidelberg: Springer, pp. 81-94 (2018)
  4. Fujiwara, S., Hidese, R., Inoue, T., Fukuda, W. Protein synthesis and polyamines in thermophiles: Effect of polyamines on nucleic acid maintenance and gene expression, In Polyamines, a universal molecular nexus for growth, survival and specialized metabolism, Tomonobu Kusano and Hideyuki Suzuki (eds.). Heidelberg: Springer, pp. 143-152 (2015/11)
  5. Fukuda, W., Hidese, R., Fujiwara, S. Long-chain and branched polyamines in thermophilic microbes. In Polyamines, a universal molecular nexus for growth, survival and specialized metabolism, Tomonobu Kusano and Hideyuki Suzuki (eds.). Heidelberg: Springer, pp. 15-25 (2015)