Yokomori, M., Tsuge, K., Shohda, K., Suyama, A. (2019/08) Improved measurement of absolute mRNA quantity without reversetranscription. Analytical Biochemistry, 579, 1-8
Vavricka, CJ., Yoshida, T., Kuriya, Y., Takahashi, S., Ogawa, T., Ono, F., Agari, K., Kiyota, H., Li, J., Ishii, J., Tsuge, K., Minami, H., Araki, M.*, Hasunuma, T.*, Kondo, A. (2019/05) Mechanism-based tuning of insect 3,4-dihydroxyphenylacetaldehyde synthase for synthetic bioproduction of benzylisoquinoline alkaloids, Nature Communications, 10, 2015
Tamano, K., Cox Ⅲ, RS., Tsuge, K., Miura, A., Itoh, A., Ishii, J., Tamura, T., Kondo, A., Machida, M. (2019/04) Heterologous production of free dihomo-ɤ-linolenic acid by Aspergillus oryzae and its extracellular release via surfactant supplementation, Journal of Bioscience and Bioengineering, 127, 451-457
Chang, JJ., Anandharaj, M., Ho, CY., Tsuge, K., Tsai, TY., Ke, HM., Lin, YJ., Ha Tran, MD., Li, WH., Huang, CC. (2018/06) Biomimetic strategy for constructing Clostridium thermocellum cellulosomal operons in Bacillus subtilis. Biotechnol. Biofuels, 11, 157
Chin, WC., Lin, KH., Liu, CC., Tsuge, K., Huang, CC. (2017/04) Improved n-butanol production via co-expression of membrane-targeted tilapia metallothionein and the clostridial metabolic pathway in Escherichia coli. BMC Biotechnology, 17, 36
Han, CH., Tsuge, K., Iba, H. (2016/07) Optimization of artificial operon construction by consultation algorithms utilizing LCS, 2016 IEEE Congress on Evolutionary Computation, 4273-4280
Tsuge, K., Sato, Y., Kobayashi, Y., Gondo, M., Hasebe, M., Togashi, T., Tomita, M., Itaya, M. (2015/05) Method of preparing an equimolar DNA mixture for one-step DNA assembly of over 50 fragments, Scientific Reports, 5, 10655
Chen, SK., Chin, WC., Tsuge, K., Huang, CC., Li, SY. (2013/10) Fermentation approach for enhancing 1-butanol production using engineered butanologenic Escherichia coli, Bioresource Technology, 145, 204-209
Honma, M., Tanaka, K., Konno, K., Tsuge, K., Okuno, T., Hashimotoa, M. (2012/06) Termination of the structural confusion between plipastatin A1 and fengycin IX, Bioorganic & Medichinal Chemistry, 20, 3793-3798
Hiroe, A., Tsuge, K., Nomura, C. T., Itaya, M., Tsuge, T. (2012/05) Rearrangement of gene order in the phaCAB operon leads to effective production of ultra-high-molecular-weight poly[(R)-3-hydroxybutyrate] in genetically engineered Escherichia coli, Applied and Environmental Microbiology, 78, 3177-3184
Itaya, M., Tsuge, K. (2011) Chapter nineteen - Construction and Manipulation of Giant DNA by a Genome Vector, Methods in Enzymology, 498, 47-447
Tsuge, K., Nakahigashi, K., Togashi, T., Hasebe, M., Takai, Y., Hasegawa, M., Tomita, M., Itaya, M. (2010/12) An artificial glycolysis operon library toward elucidation of possible "operon rule", Genes & Genetic Systems, 85(6), 454-454
Nakagawa, Y., Yugi, K., Tsuge, K., Itaya, M., Yanagawa, H., Sakakibara, Y. (2009/06) Operon structure optimization by random self-assembly, Natural Computing, 9(1), 173-181
Itaya, M., Fujita, K., Kuroki, A., Tsuge, K. (2008/01) Bottom-up genome assembly using the Bacillus subtilis genome vector, Nature Methods, 5, 41-43
Kuroki, A., Ohtani, N., Tsuge, K., Tomita, M., Itaya, M. (2007/09) Conjugational transfer system to shuttle giant DNA cloned by Bacillus subtilis genome (BGM) vector, Gene, 399, 72-80
Tsuge, K., Matsui, K., Itaya, M. (2007/05) Production of the non-ribosomal peptide plipastatin in Bacillus subtilis regulated by three relevant gene blocks assembled in a single movable DNA segment, Journal of Biotechnology, 129, 592-603
Nishizaki, T., Tsuge, K., Itaya, M., Doi, N., Yanagawa, H. (2007/02) Metabolic engineering of carotenoid biosynthesis in Escherichia coli by ordered gene assembly in Bacillus subtilis, Applied and Environmental Microbiology, 73, 1355-1361
Ueda, T., Itaya, M., Tsuge, K., Fujita, K., Matsuda, M., Mishizawa, M., Sugiura, W. (2006/01) Reconstruction of HIV-1 full genome clones with Bacillus subtilis, Antiviral therapy, 11(5), S192
Itaya, M., Tsuge, K., Koizumi, M., Fujita, K. (2005/11) Combining two genomes in one Cell: Stable cloning of the cyanobacterium PCC6803 genome in the Bacillus subtilis 168 genome, Proceeding of the National Academy of Sciences, USA, 102, 15971-15976
Tsuge, K., Inoue, S., Ano, T., Itaya, M., Shoda, M. (2005/11) Horizontal transfer of iturin A operon, itu, to Bacillus subtilis 168 and conversion into an iturin A producer, Antimicrobial Agents Chemotherapy, 49, 4641- 4648
Kaneko, S., Akioka, M., Tsuge, K., Itaya, M. (2005/06) DNA shuttling between plasmid vectors and a genome vector: systematic conversion and preservation of DNA libraries using the Bacillus subtilis genome (BGM) vector, Journal of Molecular Biology, 349, 1036-1044
Uotsu-Tomita, R., Kaneko, S., Tsuge, K., Itaya, M. (2005/05) Insertion of unmarked DNA sequences in multiple loci of the Bacillus subtilis 168 genome: an efficient selection method, Bioscience, Biotechnology, and Biochemistry, 69, 1036-1039
Tomita, S., Tsuge, K., Kikuchi, Y., Itaya, M. (2004/06) Region dependent efficiency for recombinational transfer of the Bacillus subtilis 168 genome, Bioscience, Biotechnology, and Biochemistry, 68, 1382-1384
Tomita, S., Tsuge, K., Kikuchi, Y., Itaya, M. (2004/04) Targeted isolation of a designated region of the Bacillus subtilis genome by recombinational transfer, Applied and Environmental Microbiology, 70, 2508-2513
Tsuge, K., Matsui, K., Itaya, M. (2003/11) One step assembly of multiple DNA fragments with a designed order and orientation in Bacillus subtilis plasmid, Nucleic Acids Research, 31, e133
Itaya, M., Fujita, K., Ikeuchi, M., Koizumi, M., Tsuge, K. (2003/10) Stable positional cloning of long continuous DNA in the Bacillus subtilis genome vector, The Journal of Biochemistry (Tokyo), 134, 513-519
Kaneko, S., Tsuge, K., Takeuchi, T., Itaya, M. (2003/09) Conversion of sub-megasized DNA to desired structures using a novel Bacillus subtilis genome vector, Nucleic Acids Research, 31, e112
Ohashi, Y., Ohshima, H., Tsuge, K., Itaya, M. (2003/04) Far different levels of gene expression provided by an oriented cloning system in Bacillus subtilis and Escherichia coli, FEMS Microbiol Letters, 221, 125-130
Tsuge, K., Ohata, Y., Shoda, M. (2001/12) Gene yerP, involved in surfactin self-resistance in Bacillus subtilis, Antimicrobial Agents and Chemotherapy, 45, 3566-3573
Tsuge, K., Akiyama, T., Shoda, M. (2001/11) Cloning, sequencing, and characterization of the iturin A operon, Journal of Bacteriology, 183, 6265-6273
Tsuge, K., Itaya, M. (2001/09) Recombinational transfer of 100-kilobase genomic DNA to plasmid in Bacillus subtilis 168, Journal of Bacteriology, 183, 5453-5458
Itaya, M., Nagata, T., Shiroishi, T., Fujita, K., Tsuge, K. (2000/11) Efficient cloning and engineering of giant DNAs in a novel Bacillus subtilis genome vector, The Journal of Biochemistry (Tokyo), 128, 869-875
Tsuge, K., Ano, T., Hirai, M., Nakamura, Y., Shoda, M. (1999/09) The genes degQ, pps, and lpa-8 (sfp) are responsible for conversion of Bacillus subtilis 168 to plipastatin production, Antimicrobial Agents and Chemotherapy, 43, 2183-2192
Tsuge, K., Ano, T., Shoda, M. (1996/04) Isolation of a gene essential for biosynthesis of the lipopeptide antibiotics plipastatin B1 and surfactin in Bacillus subtilis YB8, Archives of Microbiology, 165, 243-251
Tsuge, K., Ano, T., Shoda, M. (1995/12) Characterization of Bacillus subtilis YB8, Coproducer of lipopeptides surfactin and plipastatin B1, The Journal of General and Applied Microbiology, 41, 541-545
Itaya, M., Kaneko, S., Tsuge, K. Chapter 4 Efficient and accurate production of de novo designed large-size gene clusters by a novel Bacillus subtilis-based system. In Microbial Production, Anazawa, H., and Shimizu, S. eds. Springer (2014)
Itaya, M., Tsuge, K. Chapter 9 Genome integrity, instability and construction In Escherichia coli and Bacillus subtilis; the frontiers of molecular microbiology revisited. Sadaie, Y., and Matsumoto, K. eds. Research Signpost (2012)
Itaya, M., Tsuge, K. Construction and manipulation of giant DNA by use of a genome vector, Methods in Enzymol, 498, 427-448, Elsevier (2011/05)
Tsuge, K., Itaya, M. Chapter 5: Gene Cluster or Operon Design by Ordered Gene Assembly in Bacillus subtilis (OGAB) Method. In Bioengineering: Principles, Methodologies and Applications, Nova Science Publishers, 153-168 (2011/03)